Gerard Baquer
@GerardBaquer
Postdoc @BWHNeurosurgery @HarvardMed - computational cancer biology, spatial multiomics 💻🦠💊 "All models are wrong, some are useful"
Editors and authors👋! I'm looking to review more papers in spatial omics🔬, especially in computational integration and analysis of spatial metabolomics, proteomics, and transcriptomics💻. Please RT and DM! @imaging_ms @IMSSNews @SpatialOmics
New paper out in @OxfordJournals Briefings in Bioinformatics 📰SingleFrag: a deep learning tool for MS/MS fragment and spectral prediction and metabolite annotation academic.oup.com/bib/article/26…
We're offering free consultations for all @Harvard University researchers to discuss visa options. Please reach out @plymouthstreet or email me directly [email protected]
GSEA is one of the highly cited methods (> 50K! ) for gene set enrichment analysis. Do you really understand it?
AI-driven 3D Spatial Transcriptomics arxiv.org/abs/2502.17761
🥳 Our 3rd most downloaded article in 2024: A guide to artificial intelligence for cancer researchers by @RaqPerezLopez, @GhaffariNarmin, @AI4Pathology & @jnkath bit.ly/3CKGMeg @Medizin_TUD, @NCT_HD, @DataScienceDKFZ, @katherlab @NatResCancer #NRCtop10of2024
🚀 New paper alert! 🚀 Happy to introduce #ChemEmbed, a deep learning framework for metabolite identification that enhances MS/MS data and leverages multidimensional molecular embeddings. A 🧵 on how it works ⬇️ #metabolomics #MachineLearning #DeepLearning
SpatialLeiden: spatially aware Leiden clustering genomebiology.biomedcentral.com/articles/10.11…
Ending a Claude instance that helped you deal with some real shit in your life when the context has become too long and it's starting to go haywire.
Impact of Segmentation Errors in Analysis of Spatial Transcriptomics Data👍 biorxiv.org/content/10.110…
CORAL: Learning single-cell spatial context through integrated spatial multiomics biorxiv.org/content/10.110…
⚛️💻BSC presents the first quantum computer in Spain developed with 100% European technology 🌐The new system will be available to the research community, companies & public organisations in Spain, thus strengthening technological & industrial development throughout the country…
🥳 Our 8th most downloaded article in 2024: Exploiting temporal aspects of cancer immunotherapy by Lesterhuis et al. bit.ly/4hoEGjg #immunotherapy #cancermicroenvironment @UWAresearch @UWnews@NatResCancer #NRCtop10of2024
🥳 Our 9th most downloaded article in 2024: Tertiary lymphoid structures in anticancer immunity by @DieuNosjean et al. bit.ly/42KD7Yn #immunotherapy #cancermicroenvironment #tumourimmunology @Inserm @NatResCancer #NRCtop10of2024
‚Foundation models for biology‘ are one of 6 techs to watch in 2025 according to @Nature. Agreed, but not sure yet how to evaluate at scale. ie what is ‚general biological intelligence’? nature.com/articles/d4158…
Your first draft doesn't need to be perfect, it needs to be a complete pile of garbage that makes you question your worth as a person
Okay, another VERY exciting paper drop! 🎉📜 So you guys may know the story of how @GametoGen was started? 🐣 My part of the story begins with a visit to @geochurch at @harvardmed, with a (perhaps naive) goal: to make an oocyte from a stem cell. 🧫 With @GametoGen's support, I…
Excited to share our work MatchAnything: We pre-train strong universal image matching models that exhibit remarkable generalizability on unseen multi-modality matching and registration tasks. Project page: zju3dv.github.io/MatchAnything/ Huggingface Demo: huggingface.co/spaces/LittleF…
Top 4 things to know about doing science: 1. You need to have someone you can talk to 2. One-on-one discussions are the best 3. Think about discussions as improvisations and use the ‘yes, and’ rule 4. Create a safe space so both of you feel open to saying seemingly silly things