Joel Lüthi

We have released a @napari_imaging plugin to interactively classify objects in the napari viewer. The plugin allows users to easily spot cell types, mitotic cells, segmentation artefacts and other objects of interest. (🧵1/10) napari-hub.org/plugins/napari…

Xarray v2024.10.0 has just been released, including support for xarray.DataTree and zarr-python v3 !!! github.com/pydata/xarray/… @xarray_dev @zarr_dev

Have you ever analyzed a #microscope image before- even just a single one? Please take our survey on progress and places to still improve for image analysis software! #microscopy #imageanalysis #bioimageanalysis forum.image.sc/t/2024-image-a…

📢 PhD & Post-Docs! Don't miss the Microscopy Winter School 2025, Jan 20-24! Boost your skills with hands-on training: 🔬 Advanced Light #Microscopy #SuperResolution #CLEM 🔬Volume Scanning EM & more! 📍 Univ. of Zurich & ETH 🗓️ Register by Nov 17: zmb.uzh.ch/en/Teaching/Wi…

Thanks to all the speakers, instructors and participants of the 2024 edition of #I2K2024! Follow us on social media and monitor our website to stay updated on the next course 👉 humantechnopole.it/en/external-tr…

OME-Zarr: "Even a talk on formats [can be] interesting" @notjustmoore @PavelTomancak #I2K2024 #BioImageAnalysis

I2K (i2kconference.org) group picture time!!! Look at this AMAZING crowd!!! 🤩 @humantechnopole #I2K2024

It's great to be at #I2K2024 #i2k and see (almost) everyone in bioimage analysis. If you're interested in OME-Zarrs or what we're doing with Fractal, stop by my poster today! :)

If you didn't yet have enough good reasons to share your bioimage data, Matthew (@BioimageA), Josh (@notjustmoore), Erin (@tuesdaystitches), Assaf (@AssafZaritsky) and I are here with squirrel drawings to convince you that you should do it: journals.biologists.com/jcs/article/13…

still learning how to explore these large microsopy datasets. new trick: letting claude write small interactive UIs, customized to our data. happy to hear your tips!!

We are opening two positions at the Bioimage informatics unit – BIIF! BIIF is a unit of SciLifeLab , and also part of the National Bioinformatics Infrastructure Sweden (NBIS) . What can you do while working with BIIF?

Would you like to work on service-oriented bioimage analysis projects with fun colleagues at EMBL? embl.org/about/info/dat… Please check out the below call. Webinar is TODAY!

15 million people trusted 23&me with their DNA. Now the company is almost bankrupt, the stock about to be delisted, and almost the entire board has resigned. Who will they decide to sell your info to? 1/

our work on vitessce is out in @naturemethods!

Super stoked that @jobragantini 's @napari_imaging plugin for Meta's Segment Anything Model 2: napari-sam2, as well as our cell tracking software ultrack were showcased during Chris Cox's Keynote at Meta's Connect 2024. Jordao and I were in the audience; it was great fun!…

2 interesting bioimage analyst & IT specialist positions in Bern available! + you'd get to work with @guiwitz , which is certainly a great benefit!

Everyday is spline day, and today even more! We are releasing #SplineBox, a Python package for spline fitting 🐍 Fantastic collab with the @EPFL_Imaging Center building on my @emblebi work. Check it out, feedback welcome (love letters or angry e-mails): splinebox.readthedocs.io

Let me introduce: InstanSeg 🦠🔬💻👩‍🔬 This *would* have been a short thread about Thibaut Goldsborough’s PhD work… but he solved too many problems. Now it's a long thread about 2 preprints, a whole new approach to cell segmentation & #opensource software to make it easy to use