Pete Bankhead

If you want to learn about #bioimageanalysis I've written a free & open textbook that tries to help: bioimagebook.github.io Thanks to the wonder of @ExecutableBooks & other modern magic it's not quite like a normal book... (thread) @OpenEdEdinburgh @NEUBIAS_COST @BioimagingNA

Join us for the #VirtualPub with @petebankhead, University of Edinburgh, for a talk entitled "@QuPath for bioimage analysis." This talk is part of the Image Data Community Days and will be followed by the Tool Exchange with Stefania Marcotti, King's College London. Everyone is…

Find out about the latest QuPath developments as part of the @GloBIAS_ series 'Current and future plans for essential BIA tools' *today* (26 March, 4-5pm CET) Details & registration at globias.org/activities/bia…

Answering the call of @haesleinhuepf, @tischitischer,@petebankhead,@cmci_,@CiminiLab My @FijiSc training notes are now FAIR. All online in an open format to download and use for teaching, training and other things. All in Google Doc or PDF formats bit.ly/4hkfEBF

📢Announcing a QuPath Workshop 📢 February 24-25, 2025, in San Diego, CA, at the La Jolla Institute for Immunology. This year’s event will be all about Multiplex Immunofluorescence Analysis. The workshop will be followed by an 🎉 Advanced QuPath User’s Meeting 🎉- Feb 26

🚨 New segmentation model alert! 🚨🥳 You can finally use InstanSeg in our #BioImageAnalysis software #CellACDC! InstanSeg is a fast and multi-channel cell segmentation model by @petebankhead, Thibaut Goldsborough, & co. The multi-channel ability is very interesting!

We remixed holiday classics with an AI twist—check it out! All I Want for Christmas is Digital Pathology Frosty the Cryostat Rockin’ Around the Scanner Tonight Little AI Tool Here Come the Slides Microscopic Wonderland AI Baby QuPath Christmas youtu.be/ZtxgMLZUjU4?si…

Find out more about InstanSeg from Thibaut himself at his Virtual I2K tutorial next week! Register at i2kconference.org/virtual.html

Join us at the Virtual I2K meeting next week! Lots of image analysis tutorials - including 3 about QuPath & 1 about InstanSeg 😀💻🔬

Second QuPath v0.6.0 release candidate now available for testing at github.com/qupath/qupath/… This speeds up InstanSeg for complex annotations *and* adds much improved support to read & write OME-Zarr - @openmicroscopy

"Despite repeated insistence from experts that sharing AI training data, code, and model weights [...] are necessary best practices [...], they are not universal practices among authors or publishers" Gitter et al. 🤩 osf.io/preprints/osf/…

❗️Important info hidden in the long thread❗️ Download the new QuPath v0.6.0 *release candidate* for the easiest way to try this out 💻🔬🤖 github.com/qupath/qupath/…

I literally squeaked when I tried InstanSeg myself. I'm worried I frightened @petebankhead and Thibault Gold with my enthusiasm when I saw how good the results are. Highly, highly recommended for multiplex image analysis!!