Simon F. Nørrelykke

@SimonFlyvbjerg

BioImage analysis and teaching @harvardmed | Previously @ETH, @Princeton, MPI-PKS, @UniofOxford, @uni_copenhagen a.o. |

Boston, MA, USA

Joined July 2017

409Following

899Followers

Simon F. Nørrelykke Retweeted

HMS Image Analysis Collaboratory@HMS_IAC · Jul 17

Day 1 & 2 of #bobiac2025 🐍 With basics of Python in the bag, it was time to analyze images: image handling, pre-processing, cell segmentation and ilastik. We could not have organized this course without the generous support of @BioimagingNA. Thank you!

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Simon F. Nørrelykke@SimonFlyvbjerg · Jul 14

First day of #bobiac2025. Six days of intensive Python based #BioImageAnalysis. Intro by @FedeGasparoli - "This will be a long week, but it will change your life". iac.hms.harvard.edu/bobiac/2025/

SimonFlyvbjerg's tweet image. First day of #bobiac2025. Six days of intensive Python based #BioImageAnalysis. Intro by @FedeGasparoli - "This will be a long week, but it will change your life".
iac.hms.harvard.edu/bobiac/2025/

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Anne Carpenter, PhD@DrAnneCarpenter · Jun 24

Broad's Machine Learning in Drug Discovery Symposium coming soon! Nov 7, 2025. Another great lineup. In person (Cambridge MA) and online options Register by July 4 for a discount broadinstitute.org/machine-learni…

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BioImaging North America@BioimagingNA · Jun 23

Happy #MicroscopyMonday! #microscopycommunity- last days to submit your abstract for GBIxBINA 2025! Abstracts are due June 25. Join us in Montreal and share your work with the global bioimaging community & explore cutting-edge advancements Register here: buff.ly/mKnckTG

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Simon F. Nørrelykke@SimonFlyvbjerg · Jun 9

Come and work with us! Super exciting and relevant projects! Become an #AI pro and do something positive for the 🌍! 👩‍🎓 🧑‍🎓

HHuman Technopole@humantechnopole · Jun 9

🚀 Fully-funded #PhD opportunity in Computational Biology with our @florianjug @jug_lab through @polimi DADS programme! Co-supervision by @FraIev84 🧬 Use #AI to decode complex biological data across scales. Apply by 9 July 👉 humantechnopole.it/en/news/1-full…

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HMS Image Analysis Collaboratory@HMS_IAC · May 30

‼️3 days left to apply to the Boston Bioimage Analysis Course (BoBiAC)! 💻 Get started w/Python & learn to perform segmentation, classification & colocalization on fluorescence microscopy images — no programming experience required! 🗓️ Apply by June 1st! iac.hms.harvard.edu/bobiac/2025/

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Simon F. Nørrelykke@SimonFlyvbjerg · May 23

Our next Training Grant deadline is 6 June. If you’d like to attend a microscopy or bioimage analysis workshop in the next 6 months to support your research in #cellbio, but don’t have sufficient funding, check out the details: biologists.com/grants/jcs-foc…

FFocalPlane@focalplane_jcs · May 23

Clara Hayn @CHaynOrganos blogs about the @Fr_BioImaging Advanced Training course covering light-sheet microscopy and its application to neuroscience and 3D cell culture. Clara was supported by a @J_Cell_Sci-FocalPlane Training Grant. focalplane.biologists.com/2025/05/22/wor…

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Simon F. Nørrelykke@SimonFlyvbjerg · May 21

Great work by group member @iRanitK that should be relevant for anyone wanting to measure how well their segmentation algorithms are performing.

RRanit Karmakar@iRanitK · May 20

🚨 New paper out: SoftPQ – a robust metric for instance segmentation 🧠📊 Hard IoU thresholds miss the nuance. We propose: ✔️ Soft matching ✔️ Tunable thresholds ✔️ Sublinear penalties Rovust, interpretable evaluation. 📄 Paper: ⬇️ arxiv.org/abs/2505.12155 w/ @SimonFlyvbjerg

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Simon F. Nørrelykke Retweeted

EPFL Center for Imaging@EPFL_Imaging · May 13

🚨 Job Alert. Like and retweet! The @EPFL_Imaging Center and the CIME (Interdisciplinary Center for Electron Microscopy) are looking for an expert for data analysis and processing! lnkd.in/eaZuhWjp

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Simon F. Nørrelykke@SimonFlyvbjerg · May 8

Thanks to generous support from @BioimagingNA we now have even more fee-waivers for our workshop. No funds, but want to learn? Apply below.

HHMS Image Analysis Collaboratory@HMS_IAC · May 8

💻 Apply to our beginner-friendly Boston Bioimage Analysis Course! Get started with Python and learn to analyze fluorescence microscopy images—no coding experience required! Fee waivers available thanks to funding from @BioimagingNA! 🗓️ Apply June 1st! iac.hms.harvard.edu/bobiac/2025/

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Simon F. Nørrelykke Retweeted

France-BioImaging Research Infrastructure@Fr_BioImaging · May 6

[TRAINING] Apply for the new EMBO Course📢 Practical courses on advanced #bioimageanalysis, including image analysis workflows, data management, deep-learning... For early-career/image analysis scientists 📅 Sep 14–19, 2025 🌍 On site or online 📌Apply by June 4 🔗Link in coms

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HMS Image Analysis Collaboratory@HMS_IAC · Apr 22

‼BREAKING‼ New funding secured for the Boston Bioimage Analysis Course (BoBiAC) this July at @harvardmed. Fees down 37%, with waivers for academic applicants, for an intensive hands-on intro to bioimage analysis with Python! Apply by June 1st! iac.hms.harvard.edu/bobiac/2025

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GloBIAS@GloBIAS_ · Apr 22

GloBIAS #BioimageAnalysis #Conference 2025 – we have opened the registration for our 2025 in-person event. Please check the webpage lnkd.in/eWqkEDxg for more information and the link to the registration form.

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Esteban Miglietta@emiglietta1 · Apr 10

🚨Workshop Latinoamericano de CellProfiler🚨 El @CiminiLab del @broadinstitute, junto a @COBA_NIH están organizando un Workshop Introductorio a CellProfiler para Latinoamérica gratuito, online y en ESPAÑOL🇪🇸/PORTUGUÉS 🇧🇷!!🎉🎊 broad.io/latam_workshop… Fecha límite: 23/4/2025

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Simon F. Nørrelykke@SimonFlyvbjerg · Mar 24

This summer, we are running a one-week intensive workshop on Python-based BioImage Analysis. Are there better ways to spend 6 days in mid-July in Boston? Probably. Would you learn as much as you will here? Probably not. Apply here: iac.hms.harvard.edu/bobiac/2025

HHMS Image Analysis Collaboratory@HMS_IAC · Mar 24

Announcing the Boston Bioimage Analysis Course — BoBiAC! Join us this July at @harvardmed in Boston for a 6-day deep dive into bioimage analysis with Python, hosted by @HMS_IAC and @cite_at_hms. Apply by May 16th 2025!

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Simon F. Nørrelykke Retweeted

HMS Image Analysis Collaboratory@HMS_IAC · Jan 8

Join us for our first workshops of 2025! 📌 Image analysis with ImageJ/Fiji 📆 Date: Jan 22 & 24, 2025 🔗 tinyurl.com/iac-fiji-20250… 📌 ImageJ/Fiji's macro language 📆 Date: Jan 28, 2025 🔗 tinyurl.com/iac-fiji-macro… 📍 Location: @harvardmed campus Open to all—don't miss out!

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Simon F. Nørrelykke Retweeted

FocalPlane@focalplane_jcs · Nov 19

If you would like to attend a #microscopy or #bioimageanalysis training course in the next ~6 months but don’t have funding, check out our JCS-FocalPlane Training Grant to see if you are eligible. Next deadline: 22 November 2024 biologists.com/grants/jcs-foc…

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Simon F. Nørrelykke Retweeted

BioImaging North America@BioimagingNA · Nov 6

The next Careers Speaker Series presentation is tomorrow, Nov 7 at 12 pm CT, hosted by the Early Career WG! Join as David Joy, Denali Therapeutics, shares about his career journey bioimagingnorthamerica.org/careers-speake… Register to attend bioimagingnorthamerica.org/events/careers… #Careers #Imaging #BioImaging

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Jennifer Waters@JenCWaters · Nov 4

I just posted one of the excellent guest lectures from our recent Microtutor LIVE course on my YouTube channel Microcourses. This is a full length lecture on co-localization analysis from Federico Gasparoli @FedeGasparoli. Enjoy!! @FionaTheFilter youtu.be/Mv4M1HaYdBc

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Simon F. Nørrelykke Retweeted

HMS Image Analysis Collaboratory@HMS_IAC · Nov 4

Eager to learn how to train your own deep learning models for image segmentation? We got you covered! We are organizing a new workshop "Build Your Own Image Segmentation Pipeline in Python" on December 9th 2024 in-person @harvardmed. Apply here: iac.hms.harvard.edu/teaching/2024-…

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