Anne Lopes

Our work on the role of the noncoding genome in de novo gene birth and protein evolution is online now! @genomeresearch @namyolivier @I2BCParisSaclay @IMPMC_Lab @DSIMB_Lab genome.cshlp.org/content/31/12/…

Nicolas Svetec, David Begun, and I wrote a review article about de novo genes. If you are interested in this topic please take a look at this final open-access version @AnnualReviews annualreviews.org/content/journa….

@anne__lopes & coll explored the ribosome profiling landscape of yeast and showed that noncoding regions are associated with a wide diversity of translation signals among which some led to detectable protein products #microproteins #riboseq #denovogenes

Bioinformaticians of the #GenomeBiologyI2BC , Lille University & Montpellier University find new ways to analyze cancer RNA in very large datasets. Very nice work from @DGautheret and collaborators 💻

Very excited about our recent work with ⁦@anne__lopes⁩ exploring the ribosome profiling landscape of yeast and detecting pervasively translated ORFs! Published in ⁦@GenomeBiology⁩! 🧬 genomebiology.biomedcentral.com/articles/10.11…

DENSE is out! Mine your genome and highlight its de novo genes :D

Choose France - CNRS AI Rising Talents This program offers exceptionally talented early-career AI researchers with the opportunity to establish and lead a research program and team for a duration of 4 years ins2i.cnrs.fr/en/cnrsinfo/ch…

Happy to share our new manuscript published in @NatureCVR! 1) Curious about how genes, small open reading frames (sORFs) and microproteins evolved in primates? We explored how these elements shaped the cardiac transcriptomes and translatomes of primates. nature.com/articles/s4416…

DENSE is out and ready to mine your favorite genome for its de novo genes! Try it out! academic.oup.com/gbe/article/16…

My latest collaboration with the one and only Anne-Ruxandra @carvunis is out in @GenomeBiolEvol ! Can we determine if/when a gene was born de novo by reconstructing its evolutionary past? We tried 👇

Population-wide transcriptomes and proteomes reveal distinct genetic control of gene expression. Great work by Elie Teyssonniere and collaboration with @RalserLab, @JuliaMuenzner, @ptrebulle. And much more to come on both levels of expression very soon… pnas.org/doi/10.1073/pn…

📢🚨 job alert! A permanent bioinformatics engineer position is open on the Integrative Bioinformatics Platform (BIOI2) @I2BCParisSaclay @CEA_Joliot Application deadline 28 June emploi.cea.fr/job/emploi-ing…

I’m so happy to be part of this retreat

Very happy to share that our manuscript on the pervasive translation of Xrn1-sensitive unstable long non-coding RNAs has been accepted in the RNA journal and should be accessible online soon.

DENSE with your favorite genome and uncover its de novo genes! Here we introduce our latest tool for DE Novo gene SEarch along with useful metrics to help you design your search! biorxiv.org/content/10.110…