Anat Kreimer 💔
@AnatKreimer
Assistant Prof. at Rutgers University @RutgersCABM mainly focused on Computational Functional Genomics.
🚀 Proud to launch ⭐Path2Space⭐ — the first AI to discover spatial biomarkers for cancer treatment! It predicts spatial gene expression from histopathology, enabling large-scale tumor microenvironment profiling. biorxiv.org/content/10.110… 🧵1/11
Massively parallel jumping assay (MPJA). High throughput assay to assess the jumping potential of thousands of retrotransposon sequences/haplotypes. Amazing work by @navneetkmatharu, @JJZhao1203, @KircherLab and many others. biorxiv.org/content/10.110…
MPRA identifies 46,802 enhancers & 164 psychiatric disorder variants in the developing cortex & organoids. Outstanding work by Chengyu Deng, @seawhalen & Katie Pollard in collaboration with @LabNowakowski, @brainevodevo + many others in psychENCODE. biorxiv.org/content/10.110…
Our new paper with @NanYang_NY is out today !!! mdpi.com/1422-0067/25/1… @SWilliNeuro @RutgersCABM
Our paper is out today !!! link.springer.com/article/10.118… @RutgersCABM @NadavAhituv @nir_yosef1 @TakaInoue5 @TalAshuach
Happy to share our paper is published in NAR today !!! @NadavAhituv @YosefLab @TalAshuach @TakaInoue5 @RutgersCABM academic.oup.com/nar/advance-ar…
I usually leave politics off this site. But the amount of antisemitism on display is pretty crazy. To all my Jewish friends and colleagues, I’m sorry and realizing I really didn’t understand/see it until now.
Our joint work with @lab_berger (@ekimbarisc) and Ron Shamir (David Pellow, @Bio_Lian) on minimizers orders based of minimum decycling sets to speed up high-throughput sequencing applications is finally published in @genomeresearch: genome.cshlp.org/content/early/…. Thanks @usisraelbsf!
Great job @Bio_Lian presenting our work on minimum-decycling-set-based minimizer orders! #RECOMB2023 @RECOMBconf
It was a pleasure to host @AnatKreimer and hear about her work on multi-parallel reporter assays (MPRAs) to decipher the function of non-coding variants and their association with diseases @ubarilan. Thanks for visiting and enjoy your time in Israel!
New manuscript with exciting findings 🥳 Utilizing nullomers in cell-free RNA for early cancer detection medrxiv.org/content/10.110…
MPRA on 680,000 sequences comprehensively covering all active regulatory elements in 3 cell lines (HepG2,K562,iPSCs). Tour de force by @vagar112 & @TakaInoue5, @JShendure and @KircherLab as part of our @ENCODE_NIH project. biorxiv.org/content/10.110…
Excited and proud to present the first paper from the Kreimer lab!!! mdpi.com/1422-0067/24/4… Great work by Justin Koesterich and collaboration with Stephan Sanders @joonomics @TakaInoue5 @NadavAhituv @RutgersCABM
Extremely honored for this. Thanks to my lab, IHG members and staff and so many people at UCSF! Looking forward to advancing the IHG and genetics and genomics research at UCSF!
Machine learning dissection of human accelerated regions in primate neurodevelopment cell.com/neuron/fulltex…