Yifan ZHOU
@yifanZHOU96
PhD student at Institut Pasteur | Archaeal Virology | metagenomics/metaviromics | AOA | Haloarchaea
TreeHub: a comprehensive dataset of phylogenetic trees nature.com/articles/s4159… 🧬🖥️🧪 github.com/wpwupingwp/tre…
Lab's first preprint! #newPI We show that viruses are not merely passive hitchhikers but active agents that recycle carbon fixed by productive chemoautotrophs, shaping our understanding of carbon and nutrient cycling in redox-active ecosystems. @JulesDeep @gtrubl @tampabayleigh
Virus-mediated recycling of chemoautotrophic biomass biorxiv.org/content/10.110… #biorxiv_micrbio
An Asgard archaeon from a modern analog of ancient microbial mats biorxiv.org/content/10.110… #biorxiv_micrbio
Viromics approaches for the study of viral diversity and ecology in microbiomes | Nature Reviews Genetics nature.com/articles/s4157…
piqtree: A Python Package for Seamless Phylogenetic Inference with IQ-TREE | bioRxiv biorxiv.org/content/10.110…
SSAlign: Ultrafast and Sensitive Protein Structure Search at Scale | bioRxiv biorxiv.org/content/10.110…
Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for next generation sequencing (pan)genome-resolved metagenomics and metatranscriptomics biorxiv.org/content/10.110…
SVbyEye: A visual tool to characterize structural variation among whole-genome assemblies academic.oup.com/bioinformatics… 🧬🖥️🧪 github.com/daewoooo/SVbyE…
🚨 new paper alert! science.org/doi/10.1126/sc… During my PhD, one of the most frustrating challenges was trying to interpret genes labeled as “hypothetical proteins.” 1/n
Identifying phage proteins that activate the bacterial innate immune system biorxiv.org/content/10.110… #biorxiv_micrbio
The MicrobeAtlas database: Global trends and insights into Earth’s microbial ecosystems biorxiv.org/content/10.110…
A dinoflagellate-infecting giant virus with a micron-length tail | bioRxiv biorxiv.org/content/10.110…
ProtGO: Universal Protein Function Prediction Utilizing Multi-Modal Gene Ontology Knowledge | Bioinformatics | Oxford Academic academic.oup.com/bioinformatics…
Comprehensive taxonomic identification of microbial species in metagenomic data using SingleM and Sandpiper nature.com/articles/s4158…
Prophages block cell surface receptors to preserve their viral progeny | Nature nature.com/articles/s4158…
Planetary-scale metagenomic search reveals new patterns of CRISPR targeting | bioRxiv biorxiv.org/content/10.110…
The Viral AlphaFold Database of monomers and homodimers reveals conserved protein folds in viruses of bacteria, archaea, and eukaryotes １．This study introduces the Viral AlphaFold Database (VAD), comprising ~27,000 predicted structures of viral proteins from all major host…
The Viral AlphaFold Database of monomers and homodimers reveals conserved protein folds in viruses of bacteria, archaea, and eukaryotes | bioRxiv biorxiv.org/content/10.110…
Nitrosarchaeum haohaiensis sp. Nov. CL1T: Isolation and Characterisation of a Novel Ammonia‐Oxidising Archaeon From Aquatic Environments …icro-journals.onlinelibrary.wiley.com/doi/10.1111/17…