Tomáš Pluskal
@tomas_pluskal
Group Leader at the Institute of Organic Chemistry and Biochemistry (@IOCBPrague). Plant biochemistry, metabolomics, genomics, bioinformatics, etc.
🚨 MetaboART 🎨 2025 – Deadline Extended: 🗓️ Submissions now open until June 13! Two categoried: 👤 Human-Created // 🤖 AI-Generated 🏆Winner @ #MetSoc25 on June 24 Details👉 tinyurl.com/dh37xt78 📩[email protected]
🎨 MetaboART 2025 is here! Turn your #metabolomics research into visual art! The categories: 👤 Human-made //🤖 AI-generated 🗓️ Submit Apr 1–May 31 🏆 Winners @ #MetSoc25 on June 24 Details 👉 tinyurl.com/dh37xt78 📩 [email protected] #MetaboART #SciArt
Today is the registration deadline for our bioML symposium on Aug 21-22. Last chance to secure your spot! More info at tinyurl.com/bioMLPrague25

⚛️ @tomas_pluskal from IOCB Prague, together with his student @roman_bushuiev and colleagues from #CIIRC CTU, Josef Šivic and @AntonBushuiev, have developed a machine learning model called #DreaMS – which accelerates the analysis of previously unknown molecules.
Mass spectrometry is a key method to discover and identify molecules in biological and environmental samples. Yet, >90% of mass spectra remain hard to interpret. We present DreaMS — a foundation model to interpret mass spectra of small molecules. nature.com/articles/s4158…
This paper represents a great effort by @roman_bushuiev and his brother @AntonBushuiev. The DreaMS foundation ML model for mass spectra of small molecules now opens lots of avenues for possible downstream applications. It might be a game changer for computational metabolomics.
Self-supervised learning of molecular representations from millions of tandem mass spectra using DreaMS go.nature.com/4k1n5iC
Team mzio will be showcasing the latest developments in #mzmine at #ASMS2025. Stop by Booth 210 for live demonstrations and insights into how you can streamline your data processing across multiple vendors, adding speed and confidence.
𝗢𝗻𝗲 𝗪𝗼𝗿𝗸𝗳𝗹𝗼𝘄. 𝗘𝘃𝗲𝗿𝘆 𝗣𝗹𝗮𝘁𝗳𝗼𝗿𝗺. Join us for a power-packed software workshop at #ASMS2025 and learn how to seamlessly & rapidly process data in real-time using #mzmine 𝗡𝗼 𝘀𝗶𝗴𝗻–𝘂𝗽 𝗿𝗲𝗾𝘂𝗶𝗿𝗲𝗱
📣 Episode 2 of The Metabolomist season 4 is live! 🎧 Join Alice Limonciel & @tomas_pluskal as they explore the complexity of #plantmetabolism, its medical potential, and the story behind a leading #metabolomics software 🌿🎧 Listen here👉 zurl.co/tomas_pluskal
🤝 IOCB Prague is hiring – we are looking for an outstanding Junior Group Leader in Biosciences to join our vibrant scientific community. See more ► uochb.cz/en/open-positi… ⤵️ #openposition #iocbprague #iocb #researchjobs #biosciences
LAST CALL for posters! Due to the overwhelming response, we have nearly reached capacity and will close poster submission EARLY. If you plan to submit a poster - now is the time. Estimate the portal to close within the next 24-48 hours!
Another year, another @mzmine_project workshop at @IOCBPrague! Both new and advanced users are learning about the latest mzmine features from our amazing instructors @AnsgarKorf, Josh Smith, @tito_damiani, and @roman_bushuiev. Also thanks to Mélissa Nothias for her great keynote!

Back in July 2023 we organized a small bioML symposium at @IOCBPrague, and it turned out to be a very pleasant and successful event. This summer we are following up with a great line-up of speakers. Please register for free, deadline May 30. tinyurl.com/bioMLPrague25

#research #massspectrometry #lipidomics Rapid MALDI-MS/MS-Based Profiling of Lipid A Species from Gram-Negative Bacteria Utilizing Trapped Ion Mobility Spectrometry and mzmine (Rudt, Froning, Heuckeroth, Ortmann, Diemand, Hörnschemeyer, Pleger, Vinzelberg, @rschmid1789,…
This is the first paper from our Piper-series, many more to follow. A great effort by multiple lab members!
𝐓𝐞𝐜𝐡𝐧𝐢𝐜𝐚𝐥 𝐀𝐝𝐯𝐚𝐧𝐜𝐞 Computational metabolomics reveals overlooked chemodiversity of alkaloid scaffolds in Piper fimbriulatum 📖 doi.org/10.1111/tpj.70… 📝 Damiani, Smith et al @tomas_pluskal 🗺️ @IOCBPrague @CzechAcademy @CharlesUniPRG
Friendly reminder to submit your oral abstract before the March 6 deadline! Registration is now open, visit metabolomics2025.org for details. #MetSoc2025 #metabolomics
🤝 In April 2024, brothers Roman and Anton Bushuiev from the teams of @tomas_pluskal @IOCBPrague and Josef Šivic @CIIRCCTU initiated a collaboration among 14 research institutes across the globe to benchmark #AI methods for the discovery of molecules from mass spectrometry data.…
We will be hosting the first mzmine Community Meeting at @IOCBPrague. Please register if you wish to learn about the latest developments in mzmine. More info: docs.google.com/document/d/12E…
