METASPACE cloud platform for spatial metabolomics

Like #Metabolomics + imaging #MassSpectrometry + #BigData + #Hipster style? metaspace2020.eu

Wrapping up, I’d like to highlight the efforts of @VSaharuka and all authors @alexandrovteam. It was a truly major effort in the lab that took us several years – in analytical chemistry, mass spectrometry, data science, software engineering, and logistics! 7/9

💡 Thinking of a feature, improvement, or enhancement we should consider? We’ve created an Ideas template to make it easy for you to share suggestions. 💬Share your idea or upvote an existing one here: github.com/metaspace2020/… Looking forward to your contributions. #ideas

🚀 2 weeks ago, METASPACE joined the @nf_core hackathon — now we have 2 public modules & an accepted pipeline proposal! 🎉 👉 Interested in contributing ? Check out the pipeline proposal and get involved: github.com/nf-core/propos… #METASPACE #nextflow #spatialmetabolomics

🚀 Missed our webinar? Watch the recording here! 🎥 We kicked off our webinar series with latest METASPACE features and best practices. Watch the full webinar here: youtube.com/watch?v=32NzUi… This is just the beginning—stay tuned for more! 🚀 #METASPACE #Webinar

⏳ Just one day to go! ⏳ Join us in our first webinar for insights on the latest features, best practices, and a live Q&A. 🔗 Register here: eventbrite.com/e/best-practic… Looking forward to seeing you there! 🚀

Did you know that METASPACE Converter allows you to seamlessly transform your dataset into AnnData or SpatialData objects ( @scverse_team ) ? Check it out and let us know how it works for you : github.com/metaspace2020/…

🔍 Did you know that you can select Regions of Interest (ROIs) in METASPACE? We’ll be sharing more tips and best practices in our upcoming webinar on March 12 — Join us to learn more! eventbrite.com/e/best-practic…

📢 We're launching how-to guides for METASPACE! Powered by Guidde.com, these step-by-step guides make it easier to navigate METASPACE features. Check out our first guide on group creation : app.guidde.com/share/playbook… What features you'd like us to cover next ?

What tool should METASPACE integrate with? Whether it's for preprocessing, visualization, or functional analysis. We want to know what tools, platforms, or pipelines would make METASPACE even more powerful for your research? Drop your ideas in the comments! 👇

Ready to take your metabolite annotation to the next level? Join our first FREE webinar on Best Practices for Metabolite Annotation in Imaging MS with METASPACE! 🔗 Register now: eventbrite.com/e/best-practic… #Metabolomics #MassSpec #Bioinformatics #METASPACE

🎆 New Year, New Goals! 🎆 Kicking off 2025 with more engagement. Jump into METASPACE Discussions – your space to connect, provide feedback, and share ideas💡 Join the community !! github.com/metaspace2020/…

So great to see cutting-edge imaging MS data shared on @metaspace2020: a recent publication from the Janfelt lab on 12 um pixel size DESI with a new sprayer. pubs.acs.org/doi/full/10.10…, public data on METASPACE metaspace2020.eu/project/deffi-…, see e.g. this overlay metaspace2020.eu/annotations?ds…

We've processed 50.000’th dataset on metaspace2020.eu 🍾 50TB of centroided imzML/ibd files from ~0.5 PB of profile data. 120+ million of metabolite annotations. Continuing hard work of @alexandrovteam, alumni, collaborators, early adopters & hundreds of users 👏🙏

Dusan, Chris (@The_AnderPLANTS), and myself had a very engaging #ASMS2024 with a lot of interest in our protocol for EDC and 4-APEBA application for spatial metabolomics. To make this more accessible here is a link to the protocols.io below! protocols.io/view/a-selecti…

This open & accessible resource will be useful to imaging mass spectrometrists & will lay a foundation for creating better imaging MS methods, for understanding how ionization works, & for training future ML models to improve metabolite identification in spatial metabolomics! 9/9

I would like to extend thanks and thumbs up to all our collaborators from 9 other labs who participated in the interlab study @The_AnderPLANTS @livia__se @mliebeke et al 8/9