Martin
@martin_kim0
tensor enjoyer
1/7 Here is a technical update for the latest release of the #SpatialData package from last week. We thank the core developers and contributors for helping us refine the framework, and the users for the precious feedback and discussions. GitHub repository: github.com/scverse/spatia…
Excited to announce a webinar series I'm hosting with @nathan_levyy starting April 9! With the release of many exciting new approaches to analyzing spatial biology, we wanted to offer a platform for the authors to present their work. For more details see: csbseminar.github.io
Announcing the Computational Spatial Biology seminar! With @justjhong, we’re bringing together researchers at the intersection of AI & spatial biology to share their work. Kicking off April 9th with Yist Yu presenting LUNA! Explore the lineup here: csbseminar.github.io
New #scverse2024 speaker announcement! We are thrilled to have Christina Leslie from @MSKCC presenting her work on statistical and ML methods for single-cell and regulatory cancer genomics. 👉 Secure your spot here: scverse.org/conference2024…
📢 Abstract submission deadline extended to Jul 15th! Submit now 👉 scverse.org/conference2024… #scverse2024
Call for Proposals for the scverse Conference 2024! 📅 Dates: 15 MAY - 30 JUN Types: Posters & Talks (10-15 min), Workshops (30-45 min demos), Birds-of-a-Feather sessions, Sticker Contest Submit abstracts online. Join us and share your work! #scverse2024
Open source tools are crucial for biomedical research. We're collaborating with @KavliFoundation + @Wellcometrust to support developers & maintainers of critical #OpenSource projects, promoting innovation & community engagement in the field. More ▶️ czi.co/3zjN56l
📢 We're thrilled to announce that we are offering travel grants to cover registration fees and travel expenses for our #scverse2024 conference 🌏Researchers from low- and middle-income countries are especially encouraged to apply! 👉Apply now: scverse.org/conference2024…
Pumped for @fabian_theis talk at #scverse2024! 💪
Excited to announce @fabian_theis as one of our invited speakers for the first #scverse2024 conference! Don't miss out on his insights into single-cell advancements. 👉 Register now at scverse.org/conference2024… to secure your spot!
Exciting News! Registrations for the #scverse2024 Conference at the Technical University of Munich, Sep 10-12, 2024 are OPEN! 🎉Join us to advance methods for single-cell omics research. 👉 Register now: scverse.org/conference2024… Follow us for more on Zulip: scverse.zulipchat.com
How can we better reveal cellular 🦠and sample🧍variation from large-scale scRNA-seq studies? We have released a new and improved deep generative model, #MrVI, in scvi-tools and on bioRxiv, accompanied by real-world use cases. A thread... 🧵1/ biorxiv.org/content/10.110…
Exciting news for the Python Single-Cell Community! Save the date for the first scverse conference in Munich from September 10-12. Inspiring talks, interactive workshops, and networking opportunities. Stay tuned for the registrations, speaker announcements, and more! #scverse2024
What's a good way of organizing scRNA-seq data for training foundation models? Say you run 1k experiments and each measures counts for 1M cells with varying metadata and orthogonal data. Storing these data in one gigantic array isn’t exactly easy. We wondered whether it’s…
Are you puzzled about your batch correction practices after reading: biorxiv.org/content/10.110… . We were too and provide some insights here. @pmelsted @adamgayoso @YosefLab @martin_kim0 colab.research.google.com/drive/15k5kahl…
scVI-hub provides standardized access to pretrained single-cell genomics models. @adamgayoso @martin_kim0 @valehvpa @YosefLab biorxiv.org/content/10.110…
What if we could use AI to evaluate AI? 🧐 This would save thousands of human-hours---e.g., on platforms like @lmsysorg. But it introduces bias! Enter AutoEval Done Right: producing unbiased evaluations of models with synthetic data! arxiv.org/abs/2403.07008