Laura Cantini
@cantinilab
PI of the machine learning for Integrative genomics lab @institutPasteur and @CNRS @ERC_Research #multiomics #singlecell #machinelearning [email protected]
I am incredibly grateful and excited to have been selected for an @ERC_Research Starting Grant to model the evolution of a cell through multi-omics integration. Many thanks to my team, mentors and everyone who helped along the way. Let's get started! #EUfunded #ERCStG
🎉 The latest ERC Starting Grant competition results are out! 400 bright minds have been awarded over €628 million to fund ideas at the frontiers of science & scholarship. Find out who, where and why 👉 erc.europa.eu/news-events/ne… 🇪🇺 #EUfunded #FrontierResearch #ERCStG @HorizonEU
Welcome to two new lab members @clement_wh (cosupervision @lucapinello )and Anna Audit (cosupervision @gabrielpeyre )! Recruited on @ERC_Research project MULTI-viewCELL. They will work on GRN inference and cell trajectory inference from temporal single-cell RNA data, respectively
#ResultatScientifique🔎 | scPRINT : le premier modèle d'IA français pour déchiffrer les réseaux génétiques 🤝 @CNRS @CNRS_Meudon ✍️ @cantinilab & @gabrielpeyre 📕 @NatureComms | buff.ly/LV1EW0h buff.ly/XMcDog0
.@jkobject @julessamaran @cantinilab @gabrielpeyre present a foundation model trained on 50 million cells, generating a meaningful gene network with zero-shot ability. #BiotechNatureComms @NatureComms nature.com/articles/s4146…
🚀 Our perspective is out in @Nature! We present a roadmap for Multimodal Foundation Models (MFMs) — large AI models pretrained across multi-omics and multi-timepoint data — to serve as the computational backbone for building virtual cells. Read the full paper in Nature:…
Excited to see scPRINT published in @NatureComms ! scPRINT is a large cell model for the inference of gene networks pre-trained on 50Mcells with innovative pretraining tasks inspired from biology. Work led by @jkobject
I am super happy to annonce that after 9 months under review the first paper of my PhD: scPRINT is finally available on Nature Comms! 🎉🧬 nature.com/articles/s4146…
🇫🇷Depuis 2007, @FondationLOreal s'engage avec l'@UNESCO et @AcadSciences pour accélérer les carrières des jeunes chercheuses. Les candidatures pour le Prix Jeunes Talents France 2025 L'Oréal-UNESCO sont ouvertes. Candidatez avant le 26 février 👉 bit.ly/4fTEozm #FWIS2025
🚨 Job alert 🚨 1 PhD + 1 Technician Our lab is looking for motivated candidates interested in understanding the impact of diets and lifestyle on tumor development, anti-tumor immunity and metastasis! Apply and join our team! Info below 👇 .. please RT 🙏
🎄🎁 Christmas preprint alert! 🎁🎄 We present a novel approach to integrating patient-specific gene regulatory network models (GRNs) with multi-omics data to enhance cancer survival predictions 🧬📊 👉 Read it on BioRxiv: biorxiv.org/content/10.110… 🧵 Highlights below!
@cantinilab, chercheuse au @CNRS et à l’Institut Pasteur, récompensée par la médaille de bronze du CNRS 2024. Entre mathématiques et biologie pour apporter des outils d’aide à la compréhension du développement des organismes et des maladies humaines. 👉insb.cnrs.fr/fr/personne/la…
New from our lab (from @tobiasbernecker and Ghalia Rehawi): ARROW-Diff (AutoRegressive RandOm Walk Diffusion), a fresh approach for efficient graph generation. Looking forward to apply it to gene regulatory networks and biomolecule design. Check it out: tinyurl.com/5xbf7pjn
We' re #hiring a #postdoc in my team @institutpasteur @CNRS funded by @InstitutPrairie to work on the inference of molecular mechanisms from the integration of spatial transcriptomics and #singlecell multi-omics data. Learn more at emploi.cnrs.fr/Offres/CDD/UMR…
Happy to share with you "Integrative spatial and genomic analysis of tumor heterogeneity with Tumoroscope", with @ShadiShafighi, @ewa_szczurek, and ..... rdcu.be/dYuYO Great work Shadi!
🚨Preprint alert! tinyurl.com/2zkmynsd Did you ever dream of generating spatial maps of #enhancer activity at #singlecell resolution in a multicellular organism using massively parallel enhancer-reporter assays? Then spatial-scERA is the method for you!
Do you want to work at the interface of structural biology and #AI? We are #hiring Come to Paris for a @CNRS postdoc at @institutpasteur funded by @ERC_Research and co-supervised by @malletvincent Please RT!! #deeplearning #compbio More info here: research.pasteur.fr/b/vVT
#TalentsCNRS🥉 | Laura Cantini : une médaille de bronze à l’interface entre mathématiques et biologie. Son objectif ? Apporter des outils d’aide à la compréhension du développement des organismes et des maladies humaines. ▶️ buff.ly/3ZxAQOT
Don't miss poster P296 today at @ECCBinfo if you want ro know more about unpaired multi-modal data integration from @JulesSamaran !!!!
After a very constructive back and forth with editors and reviewers of @NatureComms, scConfluence has now been published @LauCan88 @gabrielpeyre ! I'll present it this afternoon at the poster session of @ECCBinfo (P296) Published version: nature.com/articles/s4146…
After a very constructive back and forth with editors and reviewers of @NatureComms, scConfluence has now been published @LauCan88 @gabrielpeyre ! I'll present it this afternoon at the poster session of @ECCBinfo (P296) Published version: nature.com/articles/s4146…
🥳 I’m very happy to announce our preprint biorxiv.org/content/10.110… ! scConfluence combines uncoupled autoencoders with Inverse Optimal Transport to integrate unpaired multimodal single-cell data in shared low dimensional latent space. @LauCan88 @gabrielpeyre
Scientific seminars are resuming at full speed in the dpt. We'll have two great speakers in September: @FlorenceBansept on Sept 26 to discuss Host-associated microbial communities, and @ahmedElkoussy on Sept 27 to talk about single cell and spacial genomics data analysis!
Today we’re excited to freely share an early-version of, perhaps, the world’s most expansive genetics dataset: Logan. #bioinformatics #petabase #genetics #genomics #openscience biorxiv.org/content/10.110…