HMS Image Analysis Collaboratory

💻 Apply to our beginner-friendly Boston Bioimage Analysis Course! Get started with Python and learn to analyze fluorescence microscopy images—no coding experience required! Fee waivers available thanks to funding from @BioimagingNA! 🗓️ Apply June 1st! iac.hms.harvard.edu/bobiac/2025/

Day 1 & 2 of #bobiac2025 🐍 With basics of Python in the bag, it was time to analyze images: image handling, pre-processing, cell segmentation and ilastik. We could not have organized this course without the generous support of @BioimagingNA. Thank you!

Day 1 of #bobiac2025 🐍 The day started strong with @TalleyJLambert speaking about the Python ecosystem and uv. Students then gave short talks about their research (#coolscience). It was then time to code with @sci_doodles as we started basics of Python!

‼️3 days left to apply to the Boston Bioimage Analysis Course (BoBiAC)! 💻 Get started w/Python & learn to perform segmentation, classification & colocalization on fluorescence microscopy images — no programming experience required! 🗓️ Apply by June 1st! iac.hms.harvard.edu/bobiac/2025/

Machine Learning: a Lecture Note ift.tt/i3FbUp1

‼BREAKING‼ New funding secured for the Boston Bioimage Analysis Course (BoBiAC) this July at @harvardmed. Fees down 37%, with waivers for academic applicants, for an intensive hands-on intro to bioimage analysis with Python! Apply by June 1st! iac.hms.harvard.edu/bobiac/2025

Are you looking to boost your bioimage analysis skills? If so, check out the Boston Bioimage Analysis Course run by @HMS_IAC and CITE! Apply by 16 May 2025 focalplane.biologists.com/2025/04/10/bob…

Announcing the Boston Bioimage Analysis Course — BoBiAC! Join us this July at @harvardmed in Boston for a 6-day deep dive into bioimage analysis with Python, hosted by @HMS_IAC and @cite_at_hms. Apply by May 16th 2025!

Our QuPath course is back! Join us this semester to learn QuPath with a combination of lectures and hands-on exercises inspired by real research collaborations we worked on. 📌 Introduction to Bioimage Analysis using QuPath 📆 Date: Feb 10, 2025 🔗 tinyurl.com/iac-qupath-202…

Join us for our first workshops of 2025! 📌 Image analysis with ImageJ/Fiji 📆 Date: Jan 22 & 24, 2025 🔗 tinyurl.com/iac-fiji-20250… 📌 ImageJ/Fiji's macro language 📆 Date: Jan 28, 2025 🔗 tinyurl.com/iac-fiji-macro… 📍 Location: @harvardmed campus Open to all—don't miss out!

Eager to learn how to train your own deep learning models for image segmentation? We got you covered! We are organizing a new workshop "Build Your Own Image Segmentation Pipeline in Python" on December 9th 2024 in-person @harvardmed. Apply here: iac.hms.harvard.edu/teaching/2024-…

@RuzAntoine here in Milan at #I2K talking about our collaboration with @nina_k0zlova and @tarumurmur. #BioImagAnalysis

We're excited to kick off this semester with the 2nd edition of our QuPath workshop, in-person at @harvardmed on Sept. 16th, led by @RuzAntoine. Join us to learn how to analyze whole-slide fluorescence microscopy images using QuPath. More information: iac.hms.harvard.edu/teaching/2024-…

Interested in learning how our bioimage analysis group runs? Want to spend some time in lively Boston @harvardmed? We're part of the @GlobalBioImage international job shadowing program. Read more below.

🔬 Love microscopy? We’re hiring a postdoc for our Advanced Microscopy Fellows Program @harvardmed. Explore advanced techniques and more! microfellows.hms.harvard.edu/apply/

Our first virtual Microtutor course is now open for enrollment! @GlobalBioImage

The workshop has started! Great day ahead with Dominik from @ilastik_team.

We will be hosting Dominik Kutra from @ilastik_team for a one-day workshop about machine-learning-based image analysis with ilastik. In-person only on @harvardmed Longwood campus. Apply before Friday, June 3rd to secure your spot. More information: iac.hms.harvard.edu/teaching/2024-…