Saumyak Mukherjee
@SaumyakMukherj2
Computational Chemist working at the junction of chemistry, biology and physics
The last date approaching "Equilibrium Statistical Mechanics". Enrollment is free.
Presenting Biochemical Estimator & Explorer of Residues (BEER) - an open source cross-platform graphical interface software that makes it easy to get a quick idea about the chemical nature of your protein sequence. Follow the links to know more about it: arxiv.org/abs/2504.20561
Pre-announcement: MARTINI tutorial workshop, August 11-15th 2025 in Groningen, The Netherlands !! Learn basic and advanced Martini from the cocktail masters themselves. Registration will open soon.
Martini 3 - IDP is out! Improved parameters for disordered proteins, great work from Liguo Wang: nature.com/articles/s4146…
The ability to simulate whole cells will take biological research to a new level 🦠🔬📈 Join us on 18 March 2025, 15:00 CET to hear Siewert-Jan Marrink present progress on simulating whole cells with the Martini force field Registration ➡️bit.ly/3QxQWSC @CG_Martini
Check out our recent publication in ACS Nano, a work bridging gas-phase chemistry, surface science and catalysis using nanoclusters pubs.acs.org/doi/full/10.10…
Excited to share our new publication in the Journal of Physical Chemistry Letters. In this work we have analyzed the effect of crowding on protein and hydration dynamics in biocondensates. Details in the following link. doi.org/10.1021/acs.jp… #JPCL #LLPS #Condensate #Dynamics
Do you like CALVADOS, but also proteins with folded domains? If yes, check out Fan’s paper on the CALVADOS 3 model Several changes since the first preprint including a new parameter set and the application to changes in folding stability in condensates dx.doi.org/10.1002/pro.51…
I'll be presenting my work on LLPS Biophysics at this BPS mini symposium. Looking forward to interacting with the other speakers. BPS Virtual Networking Event: Biophysics of Liquid-Liquid Phase Separation biophysics.org/upcoming-netwo…
Various PhD/post-doc positions available to work on synthetic cells, including purely computational projects in our group ! nature.com/naturecareers/…
I'm excited to share a perspective I wrote in @ScienceAdvances on an exciting new paper from @FrancPesce @LindorffLarsen and @TanjaMittag on computationally designing IDR sequences with desired properties. Paper: science.org/doi/10.1126/sc… Perspective: science.org/doi/10.1126/sc…
We built Protein Language Models using Transformers to generate de-novo LLPS-prone IDPs, validated through computations and experiments. ML by @wasimXabdul at @TIFRH_buzz and experiments by @JaiRudra4 lab at @WashUBME with @Ushasi17 and @anirbanspeaksss! biorxiv.org/content/10.110…
Two fully funded positions available: #PhD in Physics and Chemistry of Biological Systems @Sissaschool @SbpSissa . Deadline Aug 26, h13:00 CET. Online application: pica.cineca.it/sissa/phd-phys… Exam (remote): Sep 9-10. More info ⬇️
Leveraging Bidirectional Nature of Allostery To Inhibit Protein–Protein Interactions (PPIs): A Case Study of PCSK9–LDLR Interaction @JCIM_JCTC @Krish_TheorChem @ibasu788 Thanks to @snbkol @serbonline and Sarfez Cure for funding #compchem doi.org/10.1021/acs.jc…
Combined MD simulation and THz spectroscopy studies on the human eye lens protein γD-crystallin reveal the importance of water entropy in the formation of biomolecular condensates via liquid-liquid phase separation @SolvationSci @SaumyakMukherj2 go.acs.org/9h0
We have an opening for a postdoc to use protein de novo design in molecular neuroscience. Good facilities and colleagues guaranteed. For questions, please contact me by e-mail. Deadline in one week - please forward to relevant candidates. mbg.au.dk/aktuelt/ledige…
An excellent collaboration between MD Simulation and THz spectroscopy investigates the importance of water entropy in #llps of proteins. It is now out in @JPhysChem lett. Thanks to @SolvationSci for funding . pubs.acs.org/doi/full/10.10…
Two very stressful places in life: 1. Airport security 2. Ausländerbehörde without a German-speaking friend
In Germany, people like to make jokes and trick others on April 1. But this is not an April Fool's joke: our next application round is right around the corner starting on April 1! Prepare your documents & mark your calendars! #apply #phd @goetheuni @fias_science @uni_mainz @MPIbp