Ignacio Arganda-Carreras
@IgnacioArganda
Bioimage and computer vision @Ikerbasque Research Associate @txiomatika (@upvehu), @DIPCehu and @BiofisikaScienc affiliate. Young member of @Jakiunde.
Full thread about BiaPy, its preprint and all the cool features available in this our collaborative effort to make #BioImageAnalysis workflows accessible to everyone. Don't miss it! 👇 #DeepLearning #BiaPy
🔬 Exciting News Alert! Our team is thrilled to share our latest work on BiaPy, our bioimage analysis library using deep learning. 🌐 biorxiv.org/content/10.110… #BiaPyPreprint #DeepLearning #BioImageAnalysis 👇
Job alert 🚨: I’m looking for a creative, ambitious, and dedicated postdoc to join me on this quest; so many exciting questions about how cortex and sub cortical structures (including spinal cord) drive adaptive motor control. Large scale 2P (limited labs 🌎 have this tech),…
How does sensorimotor (S1/M1) cortex support adaptive motor control? Come find out in our latest preprint, which spans the development of a full adult forelimb model + physics simulations, neural-modeling for control, complex 🐭behavior 🕹️, large-scale imaging, and of course…
A team led by Ignacio Arganda (UPV/EHU, Ikerbasque, DIPC, IBF) and Arrate Muñoz-Barrutia (@uc3m, @info_iisgm) has developed BiaPy, an open-code #AI platform that facilitates the analysis of biomedical images using deep learning techniques. 👇 tinyurl.com/4rf97xpv
Last two days to apply!
✨Applications are now open for PhDs at the Cambridge Machine Learning Group!✨ We're looking for outstanding candidates interested in fundamental ML research and applications to scientific domains! More info: mlg.eng.cam.ac.uk/phd_programme_… 🧵Find more about PIs & focus areas below!
📣 The countdown begins! Just 3 weeks left to apply for the AI4Life Open Call. Get expert #DeepLearning support for your bioimaging research—don't wait too long! Apply now: bit.ly/ai4life-oc2025… ⏳ Deadline: December 10, 2024 @REA_research #AI #Bioimaging #ImageAnalysis
Life scientists! The 3rd (and last) AI4Life Open Call is officially open! 🎉 We are offering deep learning support for bioimage analysis. Apply now! 🔗 ai4life.eurobioimaging.eu/third-open-cal… ⏳ Deadline: December 10, 2024 @REA_research #AI #Bioimaging #Imaging #ImageAnalysis #DeepLearning
Looking forward to it! 🤗
BiaPy ⛴️ will be at SPAOM24 in Toledo twice! We'll lead a community workshop (Day 2) and @IgnacioArganda will give an invited talk (Day 3) about our library and application ☺️ See you all there! #SPAOM2024
🆕 We have updated our preprint in @biorxivpreprint 📰 It explains better the current state of #BiaPy ⛴️ while describing as well its limitations 🤗 Hope you like it! "BiaPy: Accessible deep learning on bioimages" biorxiv.org/content/10.110…
Does this mean I’m a YouTuber now? 🤓🤭
🚀 For a fast overview on how to reuse models from the @bioimageio zoo 🦒in our notebooks 📒 (including exporting them too), check our video "BiaPy: Import & Export BioImage Model Zoo models in Notebooks" youtu.be/R0Li3tZ7Ryc?si… via @YouTube by @IgnacioArganda
📢 We are hiring, please RT! Join us as a #PhDstudent in the @ERC_Research project #DORMATRIX, modeling #breastcancer #dormancy with novel #biomaterials. Bioengineers, (bio)chemists or similar. @biogipuzkoa @Ikerbasque. More info & apply until 31/12👉bit.ly/4hM4xCr
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Would you like to use a model from the @bioimageio zoo 🦒 as core model of your BiaPy ⛴️ workflow? No worries! You can easily do that either 👇 1⃣ from the GUI 🖥️, specially if you follow the instructions of our friendly wizard 🪄🧙♀️
Have you ever analyzed a #microscope image before- even just a single one? Please take our survey on progress and places to still improve for image analysis software! #microscopy #imageanalysis #bioimageanalysis forum.image.sc/t/2024-image-a…
Applications open for studying a PhD at the Cambridge Machine Learning Group! More info below. Application deadline 3 December 2024.
✨Applications are now open for PhDs at the Cambridge Machine Learning Group!✨ We're looking for outstanding candidates interested in fundamental ML research and applications to scientific domains! More info: mlg.eng.cam.ac.uk/phd_programme_… 🧵Find more about PIs & focus areas below!
📒 Our code-free notebooks are designed to be self-explainable and (hopefully 🤞) easy to use and follow. Nevertheless, in case you feel overwhelmed by them, you can have a look at our walkthrough video on BiaPy Notebooks youtu.be/KEqfio-EnYw?si… via @YouTube by @IgnacioArganda
BrainGlobe has a new atlas, the prairie vole! For more details see the blog: brainglobe.info/blog/prairie-v… Original paper: doi.org/10.7554/eLife.…
Life scientists! The 3rd (and last) AI4Life Open Call is officially open! 🎉 We are offering deep learning support for bioimage analysis. Apply now! 🔗 ai4life.eurobioimaging.eu/third-open-cal… ⏳ Deadline: December 10, 2024 @REA_research #AI #Bioimaging #Imaging #ImageAnalysis #DeepLearning
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🎃 Happy Halloween BiaPy-ers!!! 👻 Are you a novice user scared 😱 of using #BiaPy's GUI for the first time? Fear no more! 🤗 Here you have a full video with a complete walkthrough on BiaPy's graphical user interface 🖥️⛴️🚶youtu.be/vY7aBh5FUNk?si… via @YouTube by @danifranco93
💫 If you could not attend the workshop but are interested in its content, no worries! Here you have the presentation 🖥️ used to guide the attendees: docs.google.com/presentation/d… All feedback is more than welcome! 🤗 #Biapy #BioImageAnalysis