AviMaayan

The #CFDEWorkbench platform (info.cfde.cloud) now supports gene set #EnrichmentAnalysis 🥳 👏🌎🥁data.cfde.cloud/enrichment You can now query your gene sets against gene set libraries created from 8 @NIH_CommonFund programs. #CFDE @LINCSProgram @MaayanLab @gly_gen @_hubmap

Join us on Thur. July 24 @ 2 PM ET for a virtual seminar about ChEA-KG, a newly developed @MaayanLab web-based app that enables users to analyze their gene sets in context of a human gene regulatory network (1559 transcription factors). Please register at maayanlab.cloud/turl/35e9d6a0

Genes in cells are a bit like words, and gene sets are like sentences b/c genes are reused in different contexts; To learn the language of the cell, @MaayanLab developed: A #GeneSet #FoundationModel Pre-Trained on a Massive Collection of Diverse Gene Sets biorxiv.org/content/10.110…

The @CfdeWorkbench analysis platform #GeneSetCart genesetcart.cfde.cloud is now published at @GigaScience pubmed.ncbi.nlm.nih.gov/40208796/ Read more about it @NIH_CommonFund #CFDE website: commonfund.nih.gov/dataecosystem/… and how it was applied to study #AxD disease. #Bioinformatics #AI #genesets

🚨 Cally Lin developed our well-loved #GSEA analysis on Xena, using tools from @Maayanlab! #nciitcr 📍 Catch her poster at #AACR25 🗓️ Tues, April 29, 2–5 PM 📌 Section 46, Board 7 🔗 abstractsonline.com/pp8/#!/20273/p… 👤 Connect with Cally: linkedin.com/in/callylin

So moved by this incredible story of a @Google colleague on my team using Gemini to understand his son’s rare disease. I’m in awe of Thomas, the doctors, scientists, and researchers now searching for a cure. Heartbreaking example of the potential of AI. g.co/thomas

Learn more about this exciting development here: mountsinai.org/about/newsroom… Read more on the new platform in the April 3 online issue of the journal @PLOSCompBiol here: journals.plos.org/ploscompbiol/a… For more information on the platform, visit: playbook-workflow-builder.cloud/graph/extend

Developed by a multi-institutional team led by @IcahnMountSinai @MaayanLab investigators as part of the @NIH_CommonFund, researchers across the U.S. developed the web-based platform that enables scientists to analyze & visualize data through an intuitive, interactive interface.

A powerful new software platform called the Playbook Workflow Builder is set to transform biomedical research by allowing scientists to conduct complex & customized data analyses without advanced programming skills.

Join us on Thursday, February 27 at 2:00 PM ET for a virtual seminar featuring ARCHS4, a web resource that streamlines access to over two million uniformly aligned RNA-seq samples from GEO. Please register in advance: maayanlab.cloud/turl/a60f13d9

The CFDE Workbench: Integrating Metadata and Processed Data from Common Fund Programs biorxiv.org/content/10.110… #biorxiv_bioinfo

Spreading a resource I love Enrichr 👇🏾from @MaayanLab @IcahnMountSinai FREE + web based 1. You enter your list of genes. 2. You get: GO pathways KEGG pathways + TONS of other analyses ✅ it if you do sequencing & multiomics maayanlab.cloud/Enrichr/

Read this great article about @AviMaayan, alumnus of @FDUWhatsNew fdu.edu/fdumagazine/fd… Dr. Ma'ayin is doing great things at @IcahnMountSinai!

Join us Jan. 31 for an open virtual workshop on the scientific resources & research highlight from the @NIH_CommonFund Data Ecosystem. Details below, register here: tinyurl.com/mpmnmvrh @CfdeNih @AviMaayan

Join us on Thursday, January 23 at 2:00 PM ET for a virtual seminar featuring GeneSetCart, a web application for multi-omics AI-driven gene set analysis. Please register in advance for this virtual seminar: maayanlab.cloud/turl/6660bf4c

An interesting study nature.com/articles/s4158… published this week in @Nature shows that adipocytes have an "obesogenic memory". The authors used the @MaayanLab tool #Enrichr maayanlab.cloud/Enrichr/ for part of the data analysis. #bioinformatics #scRNAseq #obesity #transcriptomics

The @CfdeWorkbench team will showcase the #CFDE information portal (cfde.info), the #CFDE data portal (data.cfde.cloud), and #GeneSetCart (genesetcart.cfde.cloud) at #ASHG2024 #ASHG24. To learn more about the #CFDE visit booth 571. @NIH_CommonFund @CFDEKC

Our #RummaGEO (rummagene.com) paper is out in Patterns: cell.com/patterns/fullt… Developed @MaayanLab #RummaGEO provides access to 171,441 human and 195,265 mouse gene sets mined from 29,294 @NCBI GEO RNA-seq studies uniformly aligned with #ARCHS4 maayanlab.cloud/archs4/

Today @MaayanLab updated #Enrichr maayanlab.cloud/Enrichr/ with a new version of the #KinaseLibrary kinase-library.phosphosite.org/site combining data from these two papers: nature.com/articles/s4158… & nature.com/articles/s4158… #kinome #cellsignaling #CPTAC #CancerResearch

The Summer Research Training Program in Biomedical Big #DataScience in the @MaayanLab @IcahnMountSinai is accepting applications for summer session 2025! Application deadline is Feb 1. Program details: labs.icahn.mssm.edu/maayanlab/summ…