bioRxiv Bioinfo

SimSpace: a comprehensive in-silico spatial omics data simulation framework biorxiv.org/content/10.110… #biorxiv_bioinfo

Analyzing and Visualizing Distance Measures for Clonal Trees biorxiv.org/content/10.110… #biorxiv_bioinfo

Prediction of bacterial protein-compound interactions with only positive samples biorxiv.org/content/10.110… #biorxiv_bioinfo

XL-Ranker: A Computational Workflow for Prioritizing Protein-Protein Interactions from Cross-Linking Mass Spectrometry Data biorxiv.org/content/10.110… #biorxiv_bioinfo

SHARP: Generating Synthesizable Molecules via Fragment-based Hierarchical Action-space Reinforcement Learning for Pareto Optimization biorxiv.org/content/10.110… #biorxiv_bioinfo

From Dataset Curation to Unified Evaluation: Revisiting Structure Prediction Benchmarks with PXMeter biorxiv.org/content/10.110… #biorxiv_bioinfo

ProtLoc-GRPO: Cell line-specific subcellular localization prediction using a graph-based model and reinforcement learning biorxiv.org/content/10.110… #biorxiv_bioinfo

Transfer learning across molecular graphs for predicting protein-ligand affinities and their changes upon mutations biorxiv.org/content/10.110… #biorxiv_bioinfo

centriflaken: an automated data analysis pipeline for assembly and in silico analyses of foodborne pathogens from metagenomic samples biorxiv.org/content/10.110… #biorxiv_bioinfo

Multi-omics evaluation of cell lines as models for metastatic prostate cancer biorxiv.org/content/10.110… #biorxiv_bioinfo

Deep Learning Prediction of Intact N-/O-Glycopeptide Tandem Mass Spectra Enhances Glycoproteomics biorxiv.org/content/10.110… #biorxiv_bioinfo

DANCE 2.0: Transforming single-cell analysis from black box to transparent workflow biorxiv.org/content/10.110… #biorxiv_bioinfo

Protein structure prediction and design for high-throughput computing biorxiv.org/content/10.110… #biorxiv_bioinfo

SEAL: Spatially-resolved Embedding Analysis with Linked Imaging Data biorxiv.org/content/10.110… #biorxiv_bioinfo

Deconvolution of Single Homeologous Polymorphism (SHP) drives phylogenetic analysis of allopolyploids biorxiv.org/content/10.110… #biorxiv_bioinfo

Enhanced Formulation of Precision Probiotics through Active Machine Learning biorxiv.org/content/10.110… #biorxiv_bioinfo

Interventionally-guided representation learning for robust and interpretable AI models in cancer medicine biorxiv.org/content/10.110… #biorxiv_bioinfo

Subphase-Labeled Mitotic Dataset for AI-powered Cell Division Analysis biorxiv.org/content/10.110… #biorxiv_bioinfo

The History of Enzyme Evolution Embedded in Metabolism biorxiv.org/content/10.110… #biorxiv_bioinfo

Base modification analysis in long read sequencing data using Minimod biorxiv.org/content/10.110… #biorxiv_bioinfo