Alicia Oshlack

Dr @gerrythill has received an @nhmrc grant to help address the issue of #antimicrobial resistance, specifically in candida fungal infections. Read more about this, and other grants, hoping to tackle the growing global issue of antimicrobial resistance: nhmrc.gov.au/about-us/news-…

Great data from @JovMaksimovic on using @10xGenomics flex probes to capture fusions in scRNAseq. My brain’s spinning with the possible applications (including MRD and CTC characterisation) #AGTA24

Just got back from #ozsinglecell2025. One of the high points of my year so far :-). Amazing science, chill vibe, nurturing research community. Congrats to @drjosephpowell @shalinhnaik @AliciaOshlack and the entire team for building something great!

The 15th of March is LC Awareness Day! I acknowledge people everywhere impacted by LC, & am very grateful for the leadership of those with LC who's awareness raising is the single most important factor toward finding solutions - @JordanCrane2 @plumskyjam & many others

We are happy to share that our SG-NEx manuscript (led by @chenying927, @nadia_davidson, @yukkeiwan and @JonathanGoeke), is now out with open access: doi.org/10.1038/s41592…, together with an update release of SG-NEx data v0.6.0!

Single-cell atlas of BAL from preschool cystic fibrosis reveals key inflammatory pathways modified by the CFTR modulator ivacaftor in the early life lung. medrxiv.org/content/10.110…

Very happy to release the single cell and spatial long read RNA seq module for our transcript discovery and quantification tool Bambu (Bambu-clump)! The key challenges were dimensionality and accurate estimation of transcript expression with minimal data biorxiv.org/content/10.110…

@ozsinglecells, #ozsinglecell25 has a new web address. ozsinglecell.com See the current list of invited speakers and stay tuned for registration details. Sponsors reach out to [email protected]

Pleased to share that our #earlyAIR cross-tissue, age-specific, #flowcytometry reference of immune cells from five tissues of the pediatric #airway is now published in @jacionline. jacionline.org/article/S0091-… @cziscience @MCRI_for_kids @UniMelbMDHS @RCHMelbourne

Thanks to a @wcrfint grant @DrKaraBritt and a team @PeterMacCC (@shomgoel, @AliciaOshlack) will be exploring the links between #obesity & #BreastCancer - read more about this novel research here... petermac.org/about-us/news-…

Be quick! You still have time to submit an oral abstract and get early bird prices

I am updating my lecture slides on #spatialtranscriptomics to use author names + remove journal names to de-emphasize brands and re-emphasize people per #HHMI recs. In the process, I realized ALL the seminal techdev work has been led by co-first authors contributing equally 🧵1/3

Andreas Halman guides you through the analysis of STRs with short read sequencing in our new paper in Current Protocols @LonsBio …rentprotocols.onlinelibrary.wiley.com/doi/10.1002/cp…

@AliciaOshlack running a tight ship chairing the Bioinformatics in Cancer and Immunology session, great talks, insightful questions and finishing on time! #abacbs24

TIL of fastqe, an emoji encoding of sequencing data files by @LonsBio, a very clever and helpful tool: github.com/fastqe/biomoji… Special #AGTA24 mobile device demo: http://115.146.95.20:8080/

Awesome talk, Andrew Lonesdale 😁🧬 Demystifying seq data with emojis ✌️😉👻

Emerging technologies session continues Jovana Maksimonic 10Xflex #AGTA24 @agtaGenomics

Our first paper on the analysis of the 10x FLEX Chromium single cell platform . In general the quality is good but you might be getting more doublets than you anticipated @JovMaksimovic @melanie_neeland @ShivanthanS @Gunjan_D12 @PeteHaitch