Steve Niu
@stevexniu
AI in Biotech @genentech previously @cbm_student @landau_lab @satijalab
We're hiring a computational intern to work on large-scale scRNA-seq—developing pipelines, integrating datasets, and uncovering biological insights for drug development. Don’t miss out—please share and apply!👇 careers.gene.com/us/en/job/2025… #Internship #Bioinformatics #DrugDiscovery
Thrilled to unveil our study on cell-cell interactions in tumor environments. Leveraging organotypic models and spatial multiomics, we're decoding macrophage biology and spatial cues that shape their behaviors – with an eye on potential therapeutics. Cheers to Nir & team! 🙌
Very excited to share our latest work from the @landau_lab, where we uncover the spatial determinants underlying macrophage heterogeneity and self-renewal in breast cancer. biorxiv.org/content/10.110…
Very excited to share our latest work from the @landau_lab, where we uncover the spatial determinants underlying macrophage heterogeneity and self-renewal in breast cancer. biorxiv.org/content/10.110…
Congratulations! This resource is highly valuable for training image segmentation models.
In the era of rapid AI advancements, #GPT4, and #segmentanything , high-quality data is essential 🌟 Honored to be a part of this incredible project: 105,774 oncological cellular annotations to advance cellular segmentation! Grateful to collaborate with amazing co-workers & PIs…
Congrats to @stevexniu on becoming a Doctor! Learned so much from this computational biologist extraordinaire! Lots of good science to come and good luck @genentech ! Pls also check out his paper published just this week nature.com/articles/s4158…
Excited to attend @icmlconf in person #ICML2022. Do check out our workshop of computational biology at Friday. (Pic 1 causality and deep learning tutorial and pic 2,3 generated by AI DALLE2 given key words Fuji film photo and painting of Baltimore)
Dear science-matchmaking 💘 twitterati, Recruiting wet and/or dry postdoctoral fellows! We integrate technology development and advanced computation to study somatic evolution, in a unique lab culture of collaboration and creativity (landaulab.org) Pls spread word!
Excited to announce the newest preprint from the Tilgner lab - biorxiv.org/content/10.110… We always knew that splicing is messy, especially at the single cell level, but we found that there's some method to the madness 1/n
We are very excited to announce the fellowship and please help us spread the word!
We are excited to announce the ICML Workshop on Computational Biology Fellowships (for students). Awards include a free registration. We encourage applications from women and underrepresented groups. The deadline is July 14th. #ICML2020 @icmlconf forms.gle/DmV8fjzVrVKd6V…
Our latest w/@NYGCtech, led by @epic_genetix- we perform a pooled CRISPR screen with scRNA+protein readout (ECCITE-seq) to identify regulators of immune checkpoints. We also introduce mixscape, a toolkit to analyze and visualize single-cell screens: biorxiv.org/content/10.110…
So thrilled to share our tale of complex SV "towers", "chasms", and "typhoons" across nearly 3000 tumor whole genomes, epic effort by Kevin H @xtYao & Julie B w/ @EngIPM @pattygalipeau @fredhutch @nygenome @darnelr @notSoJunkDNA biorxiv.org/cgi/content/sh…
In Situ Transcriptome Accessibility Sequencing (INSTA-seq) biorxiv.org/cgi/content/sh… #bioRxiv
Two papers in @CellCellPress integrating scRNA-seq datasets across modalities and technologies, including CITE-seq, scATAC, methylation, and spatial data! * LIGER (@macosko): cell.com/cell/fulltext/… * Our Seurat v3 'anchors' (led by @timoast+@aw_butler): cell.com/cell/fulltext/…
Thanks a lot @satijalab and @lionlchristiaen for the opportunity to work and learn from you guys!
Our latest paper (led by @lionlchristiaen) exploring heart/muscle fate choices in Ciona. We show how both molecular and environmental factors regulate multipotency, and identify a transcription factor marking the Second Heart Field in sea squirts+mammals: nature.com/articles/s4155…
The tech for the next decade: promises and challenges in genome biology genomebiology.biomedcentral.com/articles/10.11… … Our #AGBT19 meeting report (with the incomparable @hagentilgner) is now published in @GenomeBiology. Already cannot wait for next year's (#AGBT20 20TH ANNIVERSARY) @agbt meeting!
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We are excited to release Seurat v3! Features new methods for scRNA-seq normalization, classification, and integration: satijalab.org/seurat
Livestream for our free single cell workshop starts tomorrow at 9AM EST. If you're watching online, you can tweet questions using #singlecellgenomicsday, and we'll relay to presenters in the room. See you tomorrow! satijalab.org/scgd/livestream