Maxime Borry (@notmaxib)

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Maxime Borry@notmaxib · Nov 18

Time to switch, you can find me there bsky.app/profile/maxibo… and most of the former scitwitter community below.

SStephen Turner 🦋 @stephenturner.us@strnr · Nov 16

🦋 for Science Starter packs for genomics, bioinformatics, #Rstats, Nextflow. Moderation lists. Feeds. Let's rebuild the old scitwitter community and keep this place nice. blog.stephenturner.us/p/bluesky-for-… 🧬🖥️🧪

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Maxime Borry@notmaxib · Nov 11

A k-mer index for the entire SRA, finally.

SStephen Turner 🦋 @stephenturner.us@strnr · Nov 16

🦋 for Science Starter packs for genomics, bioinformatics, #Rstats, Nextflow. Moderation lists. Feeds. Let's rebuild the old scitwitter community and keep this place nice. blog.stephenturner.us/p/bluesky-for-… 🧬🖥️🧪

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Maxime Borry@notmaxib · Sep 19

PyDamage new version, packed with new features, including super fast base quality rescaling for #aDNA reads ! github.com/maxibor/pydama…

notmaxib's tweet image. PyDamage new version, packed with new features, including super fast base quality rescaling for #aDNA reads ! github.com/maxibor/pydama…

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Biancamaria Bonucci@Bonucci_B · Aug 30

We start back with our second sub session “Alternative Sources of microbiomes” with @notmaxib and Tziona Ben-gedalya having their tandem talk!! @archaeologyEAA

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Maxime Borry@notmaxib · Aug 30

Great attendance at the bridge building session between metagenomics and archeology at #EAA2024 ! Next year we'll maybe need to push the walls a little bit for @archaeologyEAA 2025

notmaxib's tweet image. Great attendance at the bridge building session between metagenomics and archeology at #EAA2024 ! Next year we'll maybe need to push the walls a little bit for @archaeologyEAA 2025

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Maxime Borry@notmaxib · Aug 30

Tabea Koch presenting about Birch tar this morning at #EAA2024

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Maxime Borry@notmaxib · Aug 30

Starting to build bridges this morning at #EAA2024 with the session #854 at the crossroads of metagenomics, ancient DNA, and archeology

notmaxib's tweet image. Starting to build bridges this morning at #EAA2024 with the session #854 at the crossroads of metagenomics, ancient DNA, and archeology

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Maxime Borry@notmaxib · Aug 29

We are all here #EAA2024 Kicked off with @spaam_community #spaam6 conference followed by opening ceremony at the beautiful site of Roman Fori. Don't miss out on tomorrow's session #854 👇 we are super excited to see you all!!!

BBiancamaria Bonucci@Bonucci_B · Aug 27

Ready for the #EAA2024 ? We certainly are! If you are interested in discussing how we can better integrate archaeology and ancient metagenomics, join us on Friday, 30th August, in Room 25, 1st floor, building CU002! See the schedule and map below!! 🦠📷🎙️ @archaeologyEAA

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Biancamaria Bonucci@Bonucci_B · Aug 27

Ready for the #EAA2024 ? We certainly are! If you are interested in discussing how we can better integrate archaeology and ancient metagenomics, join us on Friday, 30th August, in Room 25, 1st floor, building CU002! See the schedule and map below!! 🦠📷🎙️ @archaeologyEAA

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Maxime Borry@notmaxib · May 15, 2024

Alphabetical order mismatch and 52 of 78 neighborhoods had wrongly merged data. I spend a lot of time teaching advanced inference methods, but boring research data management remains the most essential skill. And that includes auditing for merge mistakes.

JJacob Kang-Brown@jkangbrown · May 14, 2024

The findings in the published paper, however, are completely untrue, and can only be replicated using an improperly merged dataset. The findings are an artifact of failed data management.

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Maxime Borry@notmaxib · Feb 2, 2024

Just released: efficiently computing dN/dS with comp_dnds github.com/maxibor/comp_d…

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Annika Freudiger@AnnikaFreudiger · Jan 11, 2024

Taking identity-by-descent (IBD) analysis into the wild! biorxiv.org/content/10.110… In this preprint, we leverage novel genomic methods to estimate fine-scale gradients of relatedness in animals and highlight their many applications in the field of ecology and evolution.🐒🧬 [1/3]

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Zach Reitz@ZachReitzPhD · Jan 7, 2024

Are you running antiSMASH across many genomes? Check out multiSMASH, my simple wrapper that streamlines comparative BGC analyses by parallelizing antiSMASH runs and tabulating the results. Runs BiG-SCAPE too! WIP, so feedback and bug reports appreciated. github.com/zreitz/multism…

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Maxime Borry@notmaxib · Dec 20, 2023

The eternal city of Rome will be the place to foster communication and collaboration among the most exciting fields of #Archaeology #metagenomics and #computerscience . Submit an abstract NOW for #EAA2024👇

SSPAAM-community@spaam_community · Dec 20, 2023

🚨#EAA2024 Call for Abstracts OPEN NOW! Join our session number 854👇 How: Tandem or solo presentations When: Abstracts due Feb 8th (oral) or Apr 8th (poster) Is Rome too far? EAA offers online participation Submit at submissions.e-a-a.org/eaa2024 More info e-a-a.org/EAA2024

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SPAAM-community@spaam_community · Dec 20, 2023

🚨#EAA2024 Call for Abstracts OPEN NOW! Join our session number 854👇 How: Tandem or solo presentations When: Abstracts due Feb 8th (oral) or Apr 8th (poster) Is Rome too far? EAA offers online participation Submit at submissions.e-a-a.org/eaa2024 More info e-a-a.org/EAA2024

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Maxime Borry@notmaxib · Dec 12, 2023

💻🧵 "People underestimate how impactful @scikit_learn continues to be" — @fchollet This is a crucial point that I would like to illustrate with a few figures Full post: gael-varoquaux.info/programming/pe… And thread below 👇 1/6

FFrançois Chollet@fchollet · Nov 22, 2023

People underestimate how impactful Scikit-Learn continues to be.

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Maxime Borry@notmaxib · Dec 7, 2023

Congratulations @PabloCarri6 and co-authors!🎉🎉

IInstitute of Evolutionary Biology (IBE)@IBE_Barcelona · Dec 7, 2023

📕 A study co-led by @IBE_Barcelona and @Harvard University has recovered and analyzed the ancient #genome 🦴🧬 of 146 people who inhabited the Balkan Peninsula during the 1st millennium, revealing how Slavic Europe was formed🧵 ➡️ ibe.upf-csic.es/home/-/asset_p…

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Historic Vids@historyinmemes · Nov 2, 2023

The evolution of the English language over a 1,000-year time span traces back to the 5th century when England was invaded by different tribes, including the Angles, Jutes, Saxons, and Frisians. Their languages produced what we know today as Anglo-Saxon or Old English, which…

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Whyvert@whyvert · Sep 20, 2023

There was a superb study of honesty around the world in 2019. Leave 17,000 wallets (with contact email) containing various sums of money in 355 cities across 40 countries. Would finders email the owner? The result: rates of honesty vary a LOT.

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Stelkens Lab@StelkensLab · Aug 24, 2023

20 tenure track positions available in data-driven life science in Sweden with generous start up package ($1.6M). Deadline 15 Oct 2023 scilifelab.se/career/assista…

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