nf-core
@nf_core
A community effort to collect a curated set of analysis pipelines built using Nextflow. Mastodon: @[email protected]
The @nf_core paper is out in @NatureBiotech ! 🍾 nature.com/articles/s4158… 📖🤓 Read about how the @nf_core framework provides community-curated @nextflowio bioinformatics pipelines, ready for use across any institute or research facility ✨🧬🧫🖥️ (1/5)
Interested in #nfcore #nextflow #pipelines? 🐛 Need help setting up/debugging a pipeline/run? 🦆 Developing a pipeline and need brainstorming? 🗣️ Join the @nf_core weekly helpdesk w/ experts! 1st EMEA-APAC session of 2025 today @ 10:00 (CET) on nf-co.re/join#gather-to…
Pipeline release! nf-core/pixelator v2.0.0 - nf-core/pixelator 2.0.0! Please see the changelog: github.com/nf-core/pixela…
Pipeline release! nf-core/oncoanalyser v2.0.0 - 2.0.0 - Flame Robin! Please see the changelog: github.com/nf-core/oncoan…
![nf_core's tweet card. Overview Updated to the latest WiGiTS tools (fka hmftools) Added REDUX [WiGiTS] Added NEO for neoepitope calling [WiGiTS] Replaced SvPrep / GRIDSS / GRIPSS with ESVEE [WiGiTS] Removed MarkDups [Wi...](https://pbs.twimg.com/card_img/1947074583313743872/ZTH8G5C1?format=jpg&name=orig)
Pipeline release! nf-core/scnanoseq v1.1.0 - nf-core/scnanoseq v1.1.0 - Iron Alligator! Please see the changelog: github.com/nf-core/scnano…
Pipeline release! nf-core/demultiplex v1.6.0 - 1.6.0! Please see the changelog: github.com/nf-core/demult…
![nf_core's tweet card. What's Changed Add samplesheet generation for sarek/methylseq by @lmfaber in #308 Replace [] with null as default by @FriederikeHanssen in #310 New Contributors @lmfaber made their first con...](https://pbs.twimg.com/card_img/1947074584228114432/3yE9RL0X?format=jpg&name=orig)
Pipeline release! nf-core/sarek v3.5.1 - 3.5.1 - Akkatjåkkå! Please see the changelog: github.com/nf-core/sarek/…
I thought I'd post it first, but Sara beat me to it... We have published SAMURAI, a reproducible pipeline to analyze data from shallow whole-genome sequencing experiments, leveraging the great @nf_core framework and @nextflowio. academic.oup.com/bib/article/26…
SAMURAI, our CNA detection pipeline for shallow WGS, is now published in @BriefingBioinfo! 🎉 My first first-author publication! Check out our work here ⤵️ academic.oup.com/bib/article/26… #bioinformatics #CNA #WGS @LabRomualdi @gstarwind
Pipeline release! nf-core/nanostring v1.3.1 - v1.3.1 - 2025-01-20 - Micrometre patch! Please see the changelog: github.com/nf-core/nanost…
Pipeline release! nf-core/pixelator v1.4.0 - nf-core/pixelator v1.4.0! Please see the changelog: github.com/nf-core/pixela…
This is an exciting one - the first @nf_core pipeline for remotely sensed satellite imagery 🛰️ alongside auxiliary data. It produces a set of trend files related to land-cover changes 🌍 Congrats to Felix Kummer and team on this milestone! 🎉
Pipeline release! nf-core/rangeland v1.0.0 - nf-core/rangeland 1.0.0! Please see the changelog: github.com/nf-core/rangel…
Pipeline release! nf-core/rangeland v1.0.0 - nf-core/rangeland 1.0.0! Please see the changelog: github.com/nf-core/rangel…
Pipeline release! nf-core/taxprofiler v1.2.2 - v1.2.2 - Bouncy Basenji Patch! Please see the changelog: github.com/nf-core/taxpro…
You wonder what we do at @nf_core #hackathons? Should you sign up? Should you even host a local hackathon site? You can find answers and information about the nf-core hackathons in a nf-core bytesize talk by @RikeHanssen: youtube.com/watch?v=nmp0pX…
I wrote a blog article about some of the best parts of nf-core's modular tooling and how to use it within your own organization. This was an extension of a talk I gave at the Nextflow Summit late last year. Read or watch however you prefer! youtube.com/watch?v=Pn_B2c…
✨ The @nf_core library (1400+ reusable modules, 100+ pipelines) makes bioinformatics workflows seamless and FAIR. Now, you can build a custom library for your organization! Learn how to modularize tools and future-proof your code 👇 hubs.la/Q030fcC10 #Nextflow #nfcore