Christoph Elfmann
@c_elfmann
@IMPRS_GS PhD student in bioinformatics at the @JorgStulke lab of @UniGoettingen, currently working on SubtiWiki's newest iteration
Finally fixed some issues with PTMs for the PAE Viewer! Instead of the per-atom PAE which #AlphaFold outputs for modified amino acids, the average per-residue PAE is now displayed. subtiwiki.uni-goettingen.de/v4/paeViewerDe…
Now you can also find me on @bluesky (bsky.app/profile/c-elfm…) and @joinmastodon (academiccloud.social/@elfmann)!
The PAE Viewer (subtiwiki.uni-goettingen.de/v4/paeViewerDe…) now supports evaluation of ligands and PTMs in your AlphaFold predictions, and the display of DNAs/RNAs is improved! @IMPRS_GS @uniGoettingen #alphafold #subtiwiki
I've created an offline version of the PAE Viewer with a basic CLI via Python, which you can use in your scripts. It just takes the input and opens the page in the browser with the data preloaded. Check out the new "Offline version" tab for instructions! subtiwiki.uni-goettingen.de/v4/paeViewerDe…
Congratulations, @DennisWicke , on receiving the thesis award of the Göttingen Center for Molecular Biosciences! @uniGoettingen #bacillus #subtiwiki #proudPI
Check the description of the new SubtiWiki framework by @c_elfmann @VincenzDuMont and Tim van den Berg. Enjoy the many new features! @uniGoettingen @IMPRS_GS #SubtiWiki biorxiv.org/content/10.110…
👉 Registration is now open! Please RT and distribute this information among your colleagues! rim2024.uni-hohenheim.de #VAAM #RIM2024 @UniHohenheim
Good evening from Würzburg! I am very much enjoying the @VAAM_Microbes conference with many friends and colleagues. Even presented the poster of @c_elfmann to @CommichauM this afternoon! #subtiwiki
There will be 2 opportunities to attend an in-person SubtiWiki workshop at #Grampositive2024 #subtiwiki
📌Deadlines approaching Consideration for: ⚫️Oral Presentation - 05/15/2024 ⚫️Poster - 06/01/2024 See website for list of confirmed speakers & daily schedule Hope to meet you in Bloomington! grampositivebloomington.iu.edu/index.html #Grampositive2024
An interactive visualization of conserved gene neighborhoods now on corewiki.uni-goettingen.de (#SubtiWiki's next version)! It features clusters created with @webflags1 . Big thanks to Tom Nowak for his work and @gem__atkinson for the great FlaGs tool! @IMPRS_GS #bacillus #MOTY
Finally online: @DennisWicke's paper on a strongly conserved bacterial protein that interacts with RNase P and modulates its activity in Bacillus subtilis! @uniGoettingen 🤝@uni_mr #moty @NAR_Open academic.oup.com/nar/article/do…